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Heat diffusion of a protein.
Heat diffusion of a protein.
Convex hull of a protein.
Convex hull of a protein.
Segmentation of a protein.
Segmentation of a protein.
Egi program interface.
Egi program interface.
Egi representation for two different models.
Egi representation for two different models.
Biogem.
Biogem.

pirulino blu WELCOME

Bioinformatics is one of the areas of Scientific Research currently expanding where pattern recognition techniques can found application. We are sure that many GIRPR researchers have software tools that could be used in this area and We invite all of you who are potentially interested to contact Alessandro Gaggia (alessandro.gaggia@unipv.it).

The group aims to study approaches, strategies and potential of Pattern Recognition techniques in Bionformatics and Computational Biology. Especially but not exclusively, in proteomics - where the morphology is of substantial importance for the function of proteins themselves - the modeling of the surface, comparison of protein structures, research configurations of common classes of proteins and search for similarities in protein databases, can be addressed effectively through PR techniques.

These studies represent a natural continuation of those carried out successfully in various application areas of traditional PR and Vision. Indeed, from an analysis not exhaustive but large enough, it appears that different approaches that have not been followed (or were only followed very partially) can improve significantly the results currently available. A list of open issues on which you can operate effectively is:

Protein retrieval in a database
Alignment and comparison of two proteins
All-to-all comparison and structural research of common motifs or domains
Classification of known structures
Morphological study of the interaction between proteins and other molecules (docking between proteins and between a protein and a ligand)
Using known structures to predict structural sequences of amino acids (protein threading, the problem of folding, etc.)
Prediction of links between protein molecules and potential drugs
Search in a library of drugs for the selection - always based on morphology - of proteins that interact

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pirulino blu NEWS


07/11/2012 news_date


2nd International Workshop on Pattern Recognition in Proteomics, Structural Biology and Bioinformatics
ICIAP 2013, 9-10 September 2013, Naples - Italy

Program


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22/9/2011 news_date


Nuovo Cimento Special Issue on Pattern Recognition in Proteomics, Structural Biology and Bioinformatics to appear


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13/9/2011 news_date


1st International Workshop on Pattern Recognition in Proteomics, Structural Biology and Bioinformatics
ICIAP 2011, September 13 Ravenna, Italy

Program | Author's slides


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